The manga volumes are broken down by cases. Most cases span multiple chapters. All chapters of the same case are grouped together by the same color. Sigificant events and important characters' appearances are noted in the "notes" section.

Note: The case titles are not official. I chose descriptive titles that make sense to me, so they may be different from how others describe them.

  File.1 : ?

 Suspect Suicide On Train Case part 1

 

  File.2 : The Opened Closed Area

 ......................................................... part 2

 

  File.3 : Time Trap

 ......................................................... part 3

 

  File.4 : The Meeting

 Sunset Mansion Case part 1

 

  File.5 : ?

 ......................................... part 2

 

  File.6 : Murder

 ......................................... part 3

 

  File.7 : The Sting

 ......................................... part 4

 Kaitou Kid appears

  File.8 : Genta's Misfortune

 Genta Being Followed Case part 1

 

  File.9 : Genta's Trap

 ................................................... part 2

 

  File.10 : On The Bottom...

 Pottery Case part 1

 

  File.11 : Surrounded By Hints

 ........................ part 2

 

 

 

 

 

  File.5 : Warm Ocean

 Body In A Net Case part 1

 

  File.6 : Caught In A Net

 ................................... part 2

 

  File.7 : A Courageous Decision

 ................................... part 3

 Ai finally acknowledges Ran!

  File.8 : The Swordsman Of Naniwa

 Heiji's Kendo Match Case part 1

 Heiji Hattori appears

  File.9 : The Invisible Swordsman

 ............................................... part 2

 

  File.10 : The Swordsman Of Justice

 ............................................... part 3

 

  File.11 : Ruler's Palace

 Osaka Palace Treasure Case part 1

 Heiji Hattori appears

  File.1 : The Lord's Treasure

 ....................................................... part 2

 

  File.2 : Back To The Past

 ....................................................... part 3

 

  File.3 : Inside The Father's Heart

 ....................................................... part 4

 

  File.4 : Sad Tiger Scroll

 ....................................................... part 5

 

 

 

 

  File.8 : The Lion That Was Dropped

 Kidnapping Of James Black Case part 1

 

  File.9 : P & A

 .............................................................. part 2

 Shuichi Akai appears

  File.10 : A Stupid Plan

 .............................................................. part 3

 

  File.11 : Satou's Match-Up

 Satou's Match-Up Case part 1

 

  File.1 : Satou's Odds

 ........................................... part 2

 Shuichi Akai

  File.2 : Satou's Feelings

 ........................................... part 3

 

  File.3 : ?

 Bloody Valentine Case part 1

 

  File.4 : ?

 ......................................... part 2

 

  File.5 : ?

 ......................................... part 3

 

  File.6 : ?

 ......................................... part 4

 Makoto Kyougoku appears

  File.7 : Memento Of A Wife

 Missing Watch Case part 1

 

  File.8 : Clean Scent

 ...................................... part 2

 

  File.9 : Life Of A Flower

 ...................................... part 3

 Shuichi Akai appears

  File.10 : What Is "X"?

 O X Δ Case part 1

 Jodie appears

  File.11 : O X Δ ∼ ?!

 ..................... part 2

 

  File.1 : Time To Pick The Apple

 ..................... part 3

 Vermouth appears

  File.2 : ?

 Conan & Heiji Visit Jodie Case part 1

 Jodie appears

  File.3 : The Strange Neighbor

 ........................................................ part 2

 

  File.4 : Who Are You?

 ........................................................ part 3

 

  File.5 : ?

 Murder After Soccer Game Case part 1

 

  File.6 : ?

 ........................................................... part 2

 

  File.7 : ?

 ........................................................... part 3

 

  File.8 : Raining Deja-Vu

 Chinese Restaurant Case part 1

 

  File.9 : The Misleading Washcloth

 ................................................ part 2

 

  File.10 : Cleared Memory

 ................................................ part 3

 

  File.11 : Golden Apple 1

 Golden Apple Case part 1

 Sharon Vineyard first appears; Yukiko appears

  File.1 : Golden Apple 2

 .................................... part 2

 

  File.2 : Golden Apple 3

 .................................... part 3

 

  File.3 : Golden Apple 4

 .................................... part 4

 Shuichi Akai appears

  File.4 : Golden Apple 5

 .................................... part 5

 

  File.5 : ?

 Ghost House Case part 1

 

  File.6 : ?

 .................................... part 2

 

  File.7 : ?

 .................................... part 3

 

  File.8 : The Disappearance Of Mitsuhiko

 Missing Mitsuhiko Case part 1

 

  File.9 : ?

 ............................................ part 2

 

  File.10 : ?

 ............................................ part 3

 

  File.11 : Death Island

 Death Island Case part 1

 Heiji Hattori appears

  File.1 : Dangerous Visitor

 ................................... part 2

 

  File.2 : Mysterious Words

 ................................... part 3

 

  File.3 : ?

 ................................... part 4

 

  File.4 : The Princess & The Dragon Palace

 ................................... part 5

 

  File.5 : Parade Of Ill Intent

 Parade Bomb Case part 1

 

  File.6 : Proof On The Videotape

 .................................... part 2

 

  File.7 : Bomber's Aim

 .................................... part 3

 

  File.8 : The Officer Who Never Returned

 Serial Bomber Case part 1

 Junpei Matsuda first appears

  File.9 : Unerasable Memory

 ..................................... part 2

 

  File.10 : Red Trap

 ..................................... part 3

 

  File.11 : The Most In This World...

 ..................................... part 4

 

  File.1 : Goodbye

 ..................................... part 5

 

 

 

 

  File.5 : Footsteps Of Darkness 1

 Game Developer Case part 1

 

  File.6 : Footsteps Of Darkness 2

 .......................................... part 2

 

  File.7 : Footsteps Of Darkness 3

 .......................................... part 3

 Shuichi Akai appears

  File.8 : White Snow, Black Shadow

 Meeting With Vodka Case part 1

 Shuichi Akai appears; Anywhere-ball belt introduced

  File.9 : Precarious Encounter

 ............................................... part 2

 Vodka appears

  File.10 : Fellow Passengers

 ............................................... part 3

 Vodka appears

  File.1 : The New Weapon

 ............................................... part 4

 Vodka & Gin appear; Shuichi Akai appears

 

 

 

 

 

 

  File.8 : Heiji Hattori In Grave Danger 1

 Heiji Hattori In Grave Danger Case part 1

 Heiji Hattori appears

  File.9 : Heiji Hattori In Grave Danger 2

 ............................................................... part 2

 

  File.10 : Heiji Hattori In Grave Danger 3

 ............................................................... part 3

 

  File.1 : The Luring Red Horse

 Red Horse Arson Case part 1

 Heiji Hattori appears

  File.2 : Shadow Of The Red Horse

 ........................................... part 2

 

  File.3 : Owner Of The Red Horse

 ........................................... part 3

 

  File.4 : Witness Of The Red Horse

 ........................................... part 4

 

  File.5 : Obtuse Imitation

 ........................................... part 5

 

  File.6 : Torn Friendship 1

 Torn Friendship Case part 1

 

  File.7 : Torn Friendship 2

 ........................................ part 2

 

  File.8 : Torn Friendship Final

 ........................................ part 3

 Ai lets Ayumi call her "Ai-chan"